PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547496.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 510aa    MW: 53454.3 Da    PI: 8.8629
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547496.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056183123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C+k F r  nL+ H r H
  XP_010547496.1 61 FVCEICNKGFQRDQNLQLHRRGH 83
                    89*******************88 PP

2zf-C2H211.80.00072137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H + +
  XP_010547496.1 137 WKCEKCSKKYAVQSDWKAHSKIC 159
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-56083IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-66083No hitNo description
PfamPF121718.2E-56183IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496183IPR007087Zinc finger, C2H2
SMARTSM003550.0176183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM00355210102132IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-4125158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-6132157No hitNo description
SMARTSM00355140137157IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MPVDLDNSST VSGEASVSST GNQNPPPKSA VKKKRNLPGM PDPDAEVIAL SPKALLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPEPTCV HHEPSRALGD  120
LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT  180
HRAFCDALAE ESARNRNHSK KQNPEMGIRE TVDSDPKTPA TSQSSPPPYP HPHPPPAAAP  240
APASVPVGTV AQVDAKPAEI ISSSALSIRR SAAESPEISP EVIEEIPRTI LNMNSNSNTA  300
STPSTNLSDN NGVFAGLFVS STASPSLYST TSTASPCLFA QSTSVEPISL CLSTNHGSPL  360
FGSALQDPAQ FPNPPPQPAM SATALLQKAA QMGASGGSLL RGLGIVPSTS STMDLSSQDM  420
SLAPGLGLGL PCGGGSSGSG LKELMMGNSS VFGPKQTTLD FLGLGRAVGG GGSHGGGLSA  480
LITSIGSGGL DLTGSFGGGE FPGKDISRSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547496.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9LVQ70.0IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLR0EWK50.0R0EWK5_9BRAS; Uncharacterized protein
STRINGAT5G66730.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-118C2H2-like zinc finger protein